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This Stuffed Spaghetti Squash Recipe is filled with juicy chunks of chicken, tender broccoli, and an easy cheesy filling. Comforting and surprisingly healthy, the whole family will love digging into this low-carb and gluten-free chicken and broccoli stuffed spaghetti squash.

Relatively mild in taste, Spaghetti Squash has quickly become everyone’s favorite low-carb substitute for noodles and rice. With only 42 calories per 1 cup and a badge of approval from the Paleo crew, it’s easy to see why so many people have jumped on board.
While there are many ways to enjoy spaghetti squash, my personal favorite is to stuff them full of juicy chicken, veggies, and gooey, melty cheese.
Today I’m sharing one of my favorite stuffed spaghetti squash combos – garlic chicken, tender broccoli, and cheese! Healthy, low-carb, and loved by all ages!
Table of Contents
Key Ingredients
- Spaghetti squash
- Olive oil
- Chicken breasts
- Shallots
- Garlic
- Italian seasoning
- Broccoli florets
- Cream cheese
- Greek yogurt
- Parmesan cheese
- Mozzarella Cheese

Spaghetti Squash
If this is your first time tackling this fantastic winter squash, check out my post completely dedicated to the Spaghetti Squash. I share everything I know about this delicious, low-carb vegetable, including how to cook, cut, and eat it.
To make this recipe, we’re cutting our spaghetti squash in half and baking it in the oven. This method allows you to scrape out the spaghetti squash strands and then bake them twice in the original shell (translation: make a “boat”).
If you prefer to cook your spaghetti squash a different way, that’s ok, too. Just keep in mind that different methods may result in a more watery squash. Furthermore, you may find that rather than re-baking everything in the spaghetti squash shell, you may need to bake the chicken, broccoli, cheese, and squash mixture in a casserole dish.
Stuffed Spaghetti Squash Variations
There are so many fabulous variations to this recipe. Here are some ideas:
Protein – ground beef, ground turkey, taco meat, shredded pork, meatballs, beans
Veggies – spinach, kale, bell pepper, onions, cauliflower (watery veggies like zucchini are not recommended)
Cheese – ricotta, feta, goat cheese
Herbs – oregano, thyme, basil, parsley

How to Cook Stuffed Spaghetti Squash
First, you need to decide what you want to stuff inside your spaghetti squash. In this case, we’re adding chicken, broccoli, and cheese.
1. Cook your spaghetti squash:
Preheat your oven to 400 degrees F and line a large baking sheet with parchment paper.
Cut your squash in half lengthwise (stem to end – as shown in the images) and scoop out the seeds.
Use a pastry brush (or your hands) to coat the entire surface of the squash. Sprinkle with salt and pepper and place cut-side down on your prepared baking sheet.
Bake for 45 minutes to 1 hour or until squash is tender when pierced with a fork.
Remove from the oven and allow the squash to cool for several minutes before scraping out the delicious strands of cooked squash with a fork.
- TIP: You can cook the squash the day before. Store in the refrigerator until ready to stuff and bake.
2. Cook the chicken and broccoli mixture:
When your squash has finished cooking, saute the chicken over medium-high heat until it is nearly cooked. Once the chicken has been browned, remove it to a clean plate to rest.
Return the skillet to medium heat. Add the shallots, garlic, Italian seasoning, salt, pepper, and broccoli. Stir often to prevent burning.
- NOTE: At this stage, you’re only just starting to cook the broccoli, so don’t worry about trying to get the broccoli nice and soft.
Add the chicken back to the skillet and let it finish cooking.
- TIP: If things start to burn and stick to the bottom of the skillet (particularly the garlic or shallots) add 1-2 tablespoons of water to the skillet.
3. Combine and stuff the squash halves:
Grab a large (yes, large) mixing bowl and mix together the cream cheese with the Greek yogurt. Add the chicken and broccoli, the parmesan, and half of the mozzarella cheese.
Mix well, then add the cooked spaghetti squash strands. Mix again, very gently.
Preheat oven to 350 degrees F. Divide the spaghetti squash mixture between the spaghetti squash bowls and top with the remaining shredded mozzarella cheese.
Tent your baking dish with foil; be sure the foil isn’t touching the cheese.
4. Bake:
Bake at 350 degrees for 15 minutes. Remove the foil tent and bake an additional 5-10 minutes, or until cheese is golden and bubbly.
How to Serve
Fortunately, this really is a meal within itself. Loaded with vegetables and protein, I frequently enjoy a squash boat for dinner and call it a day.
You may easily serve this as a side dish with a few other healthy recipes. Here are a few of my favs-
Salad – Cucumber salad or lettuce and tomato salad
Fruit – A side of fruit or a whole fruit salad
More veggies! Roasted Brussels sprouts or roasted asparagus!

Try These Other Squash Recipes,
- How to Roast an Acorn Squash <— helpful tutorial!
- Cheesy Buffalo Chicken Spaghetti Squash Recipe
- Spaghetti Squash with Bacon, Spinach and Goat Cheese <— Low-carb!
- Instant Pot Butternut Squash Soup
- How to Roast Butternut Squash <— helpful tutorial!
- Butternut Squash Lasagna <— reader favorite!


Chicken and Broccoli Stuffed Spaghetti Squash Recipe
Ingredients
- 1 large spaghetti squash
- 3 tablespoon olive oil, divided
- 2 large chicken breasts, chopped into bite-size pieces
- 2 shallots, minced
- 6 cloves garlic, minced
- 1 teaspoon salt
- ½ teaspoon freshly grated black pepper
- 2 teaspoon Italian seasoning
- 3 cups broccoli florets
- 4 tablespoon cream cheese, at room temperature
- ½ cup plain Greek yogurt
- ½ cup Parmesan cheese, shredded
- 1.5 cups mozzarella cheese, shredded
Instructions
Cook Spaghetti Squash
- Preheat oven to 400 degrees F and line a large baking sheet with parchment paper.
- Scrub the squash clean and dry thoroughly. Cut the squash in half using a sharp, stable and reliable knife. Cut the squash in half lengthwise (stem to end- as shown in the images). Scoop out the seeds.
- Drizzle the squash with olive oil and use a pastry brush (or your hands) to brush over the entire surface of the squash. Sprinkle with salt and pepper and place cut-side down on the lined baking sheet.
- Place squash in the oven and bake for 45 minutes to 1 hour or until squash is tender when pierced with a fork.
- When cool enough to handle, gently scrape out the squash with a fork to remove the flesh in long strands.
For the Chicken and Broccoli
- Preheat oven to 350 degrees F.
- Add one tablespoon of olive oil to a large skillet over medium-high heat. Once the pan is hot add the chicken. Season with salt and pepper. Cook the chicken for 5-6 minutes, stirring often. Remove the chicken to a clean plate and set aside.
- Return the skillet to medium heat. Add the remaining tablespoon of oil and shallots to the skillet. Sauté the shallots for 2-3 minutes, or until soft and translucent. Add the garlic, salt, pepper, and Italian seasoning, and cook until fragrant- approximately 30 seconds.
- Add the broccoli and 1-2 tablespoons of water to the skillet. Mix well and cover. Allow the broccoli to steam for 2 minutes before uncovering. Return the chicken back to the skillet. Continue to cook for 1-2 more minutes, stirring often. Remove from heat.
- Meanwhile, in a large mixing bowl combine the cream cheese with the Greek yogurt. Add the chicken and broccoli to the cream cheese mixture, mixing well to combine. Stir in the parmesan cheese and half of the shredded mozzarella cheese with the chicken and broccoli.
- Transfer the cooked strands of spaghetti squash to the mixing bowl with the chicken, broccoli, and cheeses. Gently mix to combine. Evenly divide spaghetti squash and chicken mixture between the spaghetti squash bowls. Top with mozzarella cheese (or cheese of choice) and place face up on the prepared baking sheet. Cover the baking dish and squash with foil, creating a tent to prevent the foil from touching the cheese.
- Bake at 350 degrees for 15 minutes. Remove the foil tent and bake an additional 5-10 minutes, or until cheese is golden and bubbly.
- Garnish with fresh chopped parsley or red pepper flakes, if desired.
Video
Notes
- Save time by preparing the spaghetti squash the day before.
- To get golden, bubbly cheese, broil the stuffed squash for 1-2 minutes just before serving.
- Try adding other vegetables such as kale, spinach, or bell peppers or mix with delicious sauces like pesto, marinara, or meaty spaghetti sauce.
- Store leftovers in the refrigerator and reheat in the microwave for 1-2 minutes or until warm.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.


















Awesome!! Loved this dish very much, I just had to cook it a little longer then it called for about 30 minutes more!! I will definitely do this again! Also I would add more salt!!😋😋
Fixing to try this recipe, got the squash in the
Oven. I absolutely love spaghetti squash! Is the nutritional info for 4 servings. I am doing 𝙺𝚎𝚝𝚘 and was wondering how many carbs in one serving? Not doing the Greek yogurt, subbing with sour cream, hope it comes out delicious!! I will comment and let you know!!! Thanks for the recipe!!!😊😊
Hi Valorie,
The nutritional value is for one serving – enjoy 🙂
This was delicious! My husband is not a squash fan anything. He saw this gorgeous display on my plate and asked for a bite…”Mm! That’s delicious!”
I had the same question as Jane. Is it 513 calories per boat or half of a boat is 513 calories (1026 cal total per boat)?
Thanks again for such a great recipe!
Hi Deena,
I am glad you enjoyed this as much as I do! 🙂
Each Boat is two servings, and calories are estimated as sizing of squash and chicken breast can vary.
This recipe is amazing! I was so sick of eating spaghetti squash with tomatoes and tomato sauces that I went looking for something creamy and found your recipe. I took it to work and people were asking for the recipe because it smelled so good. I will definitely be making this again. If anyone is following WW 1/4 of this recipe is 5 SP on Green.
Made this the other night. It was absolutely DELICIOUS! I will definitely be making this again. Thank you for the recipe!
Fantastic recipe! Incredibly rich in flavor and very filling. I can’t wait to eat my leftovers for lunch today <3
Wow! This recipe looked so good that I tried Spaghetti Squash for the first time. It won’t be the last–thank you for the tutorial on that! It’s so versatile. Great recipe!
This recipe made me love spaghetti squash! I’m actually making this for a 3rd time tonight!
I feel the same way about this recipe Ashlee!
This recipe looks delicious! Can you actually taste the cream cheese and yoghurt in the cheesy mixture? My husband hates yoghurt and isn’t a huge fan of cream cheese, but I was wondering if he would be able to taste those on the completed meal?
Try it 😉
I am making this, almost finished. Is it correct that the nutrition information is for 4 servings? At first I thought two servings because of using the squash half’s as boats.
Thank you! Great recipe!
Had this for the first time this week and it’s a new family fave! I could eat it weekly and will be making it in bulk and freezing it ahead of time. A total home run of a recipe! And no, Andrea, you can’t taste the yogurt or the cream cheese. A friend made it for us and I had no idea those were the ingredients until I asked for the recipe.
This recipe came out like a dream come true!